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Stem Cell and Regenerative
Biology Graduate Program

Kim, Yoon Ki

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Prof Info.

Kim, Yoon Ki.

Biological Sciences

줄기세포 및 분화연구 조직공학 및 오가노이드

Lab Info.

Research in my laboratory focuses on the regulation of gene expression via mRNA stability and translation in mammalian cells.
Our present efforts center on the molecular mechanism of nonsense-mediated mRNA decay (NMD), whereby mammalian cells recognize and selectively degrade premature termination codon (PTC)-containing defective transcripts, thus preventing the expression of deleterious truncated proteins.
The NMD pathway is tightly coupled to translation via the nuclear cap-binding protein complex (CBC), a heterodimer composed of cap-binding proteins 80 and 20.
To understand the molecular mechanism underlying the connection between NMD and translation, we are currently working on CBC-mediated translation.
We are also interested in various gene regulatory mechanisms mediated by (i) newly characterized RNAs in mammals, such as circular RNAs and noncoding RNAs, as well as (ii) diverse mRNA modifications, such as m6A, m1A, and m5C

Profile.

  • 2022.8 - Present : Professor, Dept. of Biological Sciences, KAIST
  • 2024.8 - Present : Director, Creative Research Initiatives Center for Circular RNA Research
  • 2020.12 - Present : RiboTech, CEO.
  • 2005.9 - 2022.7 : Assistant, associate, and full professor, Division of Life Sciences, Korea University
  • 2002.8 - 2005.8 : Post-Doctoral Fellow, Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, New York

Education.

  • 1998.3 - 2002.2 Ph.D. Department of Life Science, POSTECH, Korea
  • 1996.3 - 1998.2 M.S. Department of Life Science, POSTECH, Korea
  • 1991.3 - 1996.2 B.S. Department of Life Science, POSTECH, Korea

Main Research areas.

  • Regulation of RNA stability
  • Molecular mechanism of translation
  • Circular RNAs
  • RNA modifications
  • Regulation of misfolded polypeptides

Main Publications.

  • Jeeyoon Chang, Min-Kyung Shin, Joori Park, Hyun Jung Hwang, Nicolas Locker, Junhak Ahn, Doyeon Kim, Daehyun Baek, Yeonkyoung Park, Yujin Lee, Sung Ho Boo, Hyeong-In Kim, and Yoon Ki Kim (2023.11) An interaction between eIF4A3 and eIF3g drives the internal initiation of translation. Nucleic Acids Research 51(20):10950-10969.
  • Hyun Jung Hwang, Tae Lim Park, Hyeong-In Kim, Yeonkyoung Park, Geunhee Kim, Chiyeol Song, Won-Ki Cho*, and Yoon Ki Kim* (*equal contribution) (2023.10) YTHDF2 facilitates aggresome formation via UPF1 in an m6A-independent manner. Nature Communications 14:6248.
  • Hyun Jung Hwang, Hongseok Ha, Ban Seok Lee, Bong Heon Kim, Hyun Kyu Song, and Yoon Ki Kim. (2022.03) LC3B is an RNA-binding protein to trigger rapid mRNA degradation during autophagy. Nature Communications 13:1436.
  • Joori Park, Jeeyoon Chang, Hyun Jung Hwang, Kwon Jeong, Hyuk-Joon Lee, Hongseok Ha, Yeonkyoung Park, Chunghun Lim, Jae-Sung Woo, Yoon Ki Kim. (2021.12) The pioneer round of translation ensures proper targeting of ER and mitochondrial proteins. Nucleic Acids Research 49(21), 12517-12534.
  • Yeonkyoung Park, Joori Park, Hyun Jung Hwang, Byungju Kim, Kwon Jeong, Jeeyoon Chang, Jong-Bong Lee*, and Yoon Ki Kim* (*, co-corresponding authors) (2020.06) Nonsense-mediated mRNA decay factor UPF1 promotes aggresome formation. Nature Communications 11(1):3106.
  • Ok Hyun Park, Hongseok Ha, Yujin Lee, Sung Ho Boo, Do Hoon Kwon, Hyun Kyu Song, and Yoon Ki Kim (2019.05) Endoribonucleolytic cleavage of m6A-containing RNAs by RNase P/MRP complex. Molecular Cell 74(3):494-507.